kb_python.constants¶
Module Contents¶
- kb_python.constants.INFO_FILENAME = info.txt¶
- kb_python.constants.CDNA_FILENAME = cdna.fa¶
- kb_python.constants.INTRON_FILENAME = introns.fa¶
- kb_python.constants.SORTED_FASTA_FILENAME = sorted.fa¶
- kb_python.constants.SORTED_GTF_FILENAME = sorted.gtf¶
- kb_python.constants.COMBINED_FILENAME = combined.fa¶
- kb_python.constants.INDEX_FILENAME = transcriptome.idx¶
- kb_python.constants.WHITELIST_FILENAME = whitelist.txt¶
- kb_python.constants.FILTER_WHITELIST_FILENAME = filter_barcodes.txt¶
- kb_python.constants.INSPECT_FILENAME = inspect.json¶
- kb_python.constants.BUS_FILENAME = output.bus¶
- kb_python.constants.BUS_S_FILENAME = output.s.bus¶
- kb_python.constants.BUS_SC_FILENAME = output.s.c.bus¶
- kb_python.constants.BUS_UNFILTERED_FILENAME = output.unfiltered.bus¶
- kb_python.constants.BUS_FILTERED_FILENAME = output.filtered.bus¶
- kb_python.constants.BUS_CDNA_PREFIX = spliced¶
- kb_python.constants.BUS_INTRON_PREFIX = unspliced¶
- kb_python.constants.ECMAP_FILENAME = matrix.ec¶
- kb_python.constants.TXNAMES_FILENAME = transcripts.txt¶
- kb_python.constants.KB_INFO_FILENAME = kb_info.json¶
- kb_python.constants.KALLISTO_INFO_FILENAME = run_info.json¶
- kb_python.constants.REPORT_NOTEBOOK_FILENAME = report.ipynb¶
- kb_python.constants.REPORT_HTML_FILENAME = report.html¶
- kb_python.constants.COUNTS_PREFIX = cells_x_genes¶
- kb_python.constants.TCC_PREFIX = cells_x_tcc¶
- kb_python.constants.FEATURE_PREFIX = cells_x_features¶
- kb_python.constants.ADATA_PREFIX = adata¶
- kb_python.constants.GENE_NAME = gene¶
- kb_python.constants.FEATURE_NAME = feature¶
- kb_python.constants.TRANSCRIPT_NAME = transcript¶
- kb_python.constants.UNFILTERED_COUNTS_DIR = counts_unfiltered¶
- kb_python.constants.FILTERED_COUNTS_DIR = counts_filtered¶
- kb_python.constants.CELLRANGER_DIR = cellranger¶
- kb_python.constants.CELLRANGER_MATRIX = matrix.mtx¶
- kb_python.constants.CELLRANGER_BARCODES = barcodes.tsv¶
- kb_python.constants.CELLRANGER_GENES = genes.tsv¶
- kb_python.constants.BUS_UNFILTERED_SUFFIX = .unfiltered.bus¶
- kb_python.constants.BUS_FILTERED_SUFFIX = .filtered.bus¶
- kb_python.constants.FLENS_FILENAME = flens.txt¶
- kb_python.constants.BATCH_FILENAME = batch.txt¶
- kb_python.constants.ABUNDANCE_GENE_FILENAME = matrix.abundance.gene.mtx¶
- kb_python.constants.ABUNDANCE_GENE_TPM_FILENAME = matrix.abundance.gene.tpm.mtx¶
- kb_python.constants.ABUNDANCE_FILENAME = matrix.abundance.mtx¶
- kb_python.constants.ABUNDANCE_TPM_FILENAME = matrix.abundance.tpm.mtx¶
- kb_python.constants.FLD_FILENAME = matrix.fld.tsv¶
- kb_python.constants.CELLS_FILENAME = matrix.cells¶
- kb_python.constants.GENE_DIR = counts_gene¶
- kb_python.constants.GENES_FILENAME = genes.txt¶
- kb_python.constants.UNFILTERED_QUANT_DIR = quant_unfiltered¶
- kb_python.constants.SAVED_INDEX_FILENAME = index.saved¶
- kb_python.constants.INTERNAL_SUFFIX = _internal¶
- kb_python.constants.UMI_SUFFIX = _umi¶
- kb_python.constants.CAPTURE_FILENAME = capture_nonUMI.txt¶
- kb_python.constants.INSPECT_INTERNAL_FILENAME = inspect_internal.json¶
- kb_python.constants.INSPECT_UMI_FILENAME = inspect_umi.json¶
- kb_python.constants.SORT_CODE = s¶
- kb_python.constants.CORRECT_CODE = c¶
- kb_python.constants.FILTERED_CODE = filtered¶
- kb_python.constants.UNFILTERED_CODE = unfiltered¶
- kb_python.constants.PROJECT_CODE = p¶