kb_python.constants

Module Contents

kb_python.constants.INFO_FILENAME = info.txt

kb_python.constants.CDNA_FILENAME = cdna.fa

kb_python.constants.INTRON_FILENAME = introns.fa

kb_python.constants.SORTED_FASTA_FILENAME = sorted.fa

kb_python.constants.SORTED_GTF_FILENAME = sorted.gtf

kb_python.constants.COMBINED_FILENAME = combined.fa

kb_python.constants.INDEX_FILENAME = transcriptome.idx

kb_python.constants.WHITELIST_FILENAME = whitelist.txt

kb_python.constants.FILTER_WHITELIST_FILENAME = filter_barcodes.txt

kb_python.constants.INSPECT_FILENAME = inspect.json

kb_python.constants.BUS_FILENAME = output.bus

kb_python.constants.BUS_S_FILENAME = output.s.bus

kb_python.constants.BUS_SC_FILENAME = output.s.c.bus

kb_python.constants.BUS_UNFILTERED_FILENAME = output.unfiltered.bus

kb_python.constants.BUS_FILTERED_FILENAME = output.filtered.bus

kb_python.constants.BUS_CDNA_PREFIX = spliced

kb_python.constants.BUS_INTRON_PREFIX = unspliced

kb_python.constants.ECMAP_FILENAME = matrix.ec

kb_python.constants.TXNAMES_FILENAME = transcripts.txt

kb_python.constants.COUNTS_PREFIX = cells_x_genes

kb_python.constants.ADATA_PREFIX = adata

kb_python.constants.UNFILTERED_COUNTS_DIR = counts_unfiltered

kb_python.constants.FILTERED_COUNTS_DIR = counts_filtered

kb_python.constants.BUS_UNFILTERED_SUFFIX = .unfiltered.bus

kb_python.constants.BUS_FILTERED_SUFFIX = .filtered.bus