kb_python.gtf¶
Module Contents¶
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kb_python.gtf.logger¶
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class
kb_python.gtf.GTF(gtf_path)¶ Utility class to easily read and parse GTF files.
Parameters: gtf_path (str) – path to GTF file -
PARSER¶
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GROUP_PARSER¶
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static
parse_entry(line)¶ Parse a single GTF entry.
Parameters: line (str) – a line in the GTF file Returns: parsed GTF information Return type: dict
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entries(self)¶ Generator that yields one GTF entry at a time.
Returns: a generator that yields a dict of the GTF entry Return type: generator
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sort(self, out_path)¶ Sort the GTF file by chromosome, start position, line number.
Parameters: out_path (str) – path to generate the sorted GTF
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