kb_python.config

Module Contents

Functions

get_kallisto_binary_path()	Get the path to the platform-dependent Kallisto binary included with
get_bustools_binary_path()	Get the path to the platform-dependent Bustools binary included with
set_dry()	Set this run to be a dry run.
is_dry()	Return whether the current run is a dry run.
no_validate()	Turn off validation.
is_validate()	Return whether validation is turned on.

kb_python.config.PACKAGE_PATH

kb_python.config.PLATFORM

kb_python.config.BINS_DIR = bins

kb_python.config.TEMP_DIR = tmp

kb_python.config.DRY = False

kb_python.config.VALIDATE = True

kb_python.config.CHUNK_SIZE

kb_python.config.Technology

kb_python.config.WHITELIST_DIR = whitelists

kb_python.config.MAP_DIR = maps

kb_python.config.TECHNOLOGIES

kb_python.config.TECHNOLOGIES_MAPPING

kb_python.config.Reference

kb_python.config.REFERENCES

kb_python.config.REFERENCES_MAPPING

exception kb_python.config.UnsupportedOSException

Bases: Exception

Common base class for all non-exit exceptions.

kb_python.config.get_kallisto_binary_path()

Get the path to the platform-dependent Kallisto binary included with the installation.

Returns:path to the binary Return type:str

kb_python.config.get_bustools_binary_path()

Get the path to the platform-dependent Bustools binary included with the installation.

Returns:path to the binary Return type:str

kb_python.config.set_dry()

Set this run to be a dry run.

kb_python.config.is_dry()

Return whether the current run is a dry run.

Returns:whether the current run is a dry run Return type:bool

kb_python.config.no_validate()

Turn off validation.

kb_python.config.is_validate()

Return whether validation is turned on.

Returns:whether validation is on Return type:bool