kb_python.constants
¶
Module Contents¶
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kb_python.constants.
INFO_FILENAME
= info.txt¶
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kb_python.constants.
CDNA_FILENAME
= cdna.fa¶
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kb_python.constants.
INTRON_FILENAME
= introns.fa¶
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kb_python.constants.
SORTED_FASTA_FILENAME
= sorted.fa¶
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kb_python.constants.
SORTED_GTF_FILENAME
= sorted.gtf¶
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kb_python.constants.
COMBINED_FILENAME
= combined.fa¶
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kb_python.constants.
INDEX_FILENAME
= transcriptome.idx¶
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kb_python.constants.
WHITELIST_FILENAME
= whitelist.txt¶
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kb_python.constants.
FILTER_WHITELIST_FILENAME
= filter_barcodes.txt¶
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kb_python.constants.
INSPECT_FILENAME
= inspect.json¶
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kb_python.constants.
BUS_FILENAME
= output.bus¶
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kb_python.constants.
BUS_S_FILENAME
= output.s.bus¶
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kb_python.constants.
BUS_SC_FILENAME
= output.s.c.bus¶
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kb_python.constants.
BUS_UNFILTERED_FILENAME
= output.unfiltered.bus¶
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kb_python.constants.
BUS_FILTERED_FILENAME
= output.filtered.bus¶
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kb_python.constants.
BUS_MASHED_FILENAME
= mashed.bus¶
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kb_python.constants.
BUS_MERGED_FILENAME
= merged.bus¶
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kb_python.constants.
ECMAP_MERGED_FILENAME
= merged.ec¶
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kb_python.constants.
BUS_CDNA_PREFIX
= spliced¶
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kb_python.constants.
BUS_INTRON_PREFIX
= unspliced¶
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kb_python.constants.
ECMAP_FILENAME
= matrix.ec¶
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kb_python.constants.
TXNAMES_FILENAME
= transcripts.txt¶
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kb_python.constants.
KB_INFO_FILENAME
= kb_info.json¶
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kb_python.constants.
KALLISTO_INFO_FILENAME
= run_info.json¶
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kb_python.constants.
REPORT_NOTEBOOK_FILENAME
= report.ipynb¶
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kb_python.constants.
REPORT_HTML_FILENAME
= report.html¶
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kb_python.constants.
COUNTS_PREFIX
= cells_x_genes¶
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kb_python.constants.
TCC_PREFIX
= cells_x_tcc¶
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kb_python.constants.
FEATURE_PREFIX
= cells_x_features¶
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kb_python.constants.
ADATA_PREFIX
= adata¶
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kb_python.constants.
GENE_NAME
= gene¶
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kb_python.constants.
FEATURE_NAME
= feature¶
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kb_python.constants.
TRANSCRIPT_NAME
= transcript¶
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kb_python.constants.
UNFILTERED_COUNTS_DIR
= counts_unfiltered¶
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kb_python.constants.
FILTERED_COUNTS_DIR
= counts_filtered¶
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kb_python.constants.
CELLRANGER_DIR
= cellranger¶
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kb_python.constants.
CELLRANGER_MATRIX
= matrix.mtx¶
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kb_python.constants.
CELLRANGER_BARCODES
= barcodes.tsv¶
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kb_python.constants.
CELLRANGER_GENES
= genes.tsv¶
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kb_python.constants.
BUS_UNFILTERED_SUFFIX
= .unfiltered.bus¶
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kb_python.constants.
BUS_FILTERED_SUFFIX
= .filtered.bus¶
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kb_python.constants.
BATCH_FILENAME
= batch.txt¶
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kb_python.constants.
ABUNDANCE_FILENAME
= matrix.abundance.mtx¶
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kb_python.constants.
CELLS_FILENAME
= matrix.cells¶
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kb_python.constants.
GENE_DIR
= counts_gene¶
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kb_python.constants.
GENES_FILENAME
= genes.txt¶
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kb_python.constants.
SORT_CODE
= s¶
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kb_python.constants.
CORRECT_CODE
= c¶
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kb_python.constants.
FILTERED_CODE
= filtered¶
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kb_python.constants.
UNFILTERED_CODE
= unfiltered¶
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kb_python.constants.
PROJECT_CODE
= p¶